Hello,
I am running into a problem when trying to do the "HbO/HbR Overlay" section of the workshop. Slides 12 and 13.
After following the instructions, the GUI produces an image that has both hemispheres showing dark red/orange heat mappings.
I have tried multiple iterations of:
- importing the probe file/register to surface
- just importing the probe file
- just registering to surface the initial probe that GUI loads
- ensuring that I am in the file path with the "groupresults.mat" demo output
- running it from the "image_recon_demo" folder instead of the "homerOutput" folder
- running it after doing image_recon for, both, subj 1 and 2
- running it before doing image_recon for subj 1 and 2
- setting the time window from 4-8 seconds
- leaving the time window at default ~1-18
Regardless of the above changes, I get the same output that shows both hemispheres with significant activation (see attachment) from the Hb Conc overlay tool.
So, this question is to simultaneously check - am I doing something wrong? Or, is this a "new" bug? (most likely the former, but that's why I am asking! Ha)
Apologies if this has been asked before, I tried scouring the forum for something similar but only found tangentially related threads.
Thank you for your time!
You don't appear to be a premium homer user. It is not clear how you watched this part of the workshop, or if you did, since you should only access those training materials if you are a premium homer user.
I haven't used this overlay function in a while, so I don't recall the steps.
Hopefully someone else can answer.
I think Meryem Yücel @mayucel maybe has experienced this issue and is working through it. Maye they are about to post a fix.
@dboas Thanks, David. That's strange about the account status. I paid for my premium account on Feb 22, 2023. But looking at my account info, it looks like I have both a freebie account and a premium account. That could be where the confusion came from. Either way, thanks for your input.
Can you try image recon instead of overlay and let us know what you get?
@mayucel - We managed to fix our issue - it related to changing the "Select [0 2e7] for HbO display".
Thanks for your time!
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