During my data analysis I use block averaging and GLM. For both processing streams, I use the hmrR_PruneChannels function. In the Homer3 display, I can see the excluded channels, as well as in the betta coefficients data (betta coefficients for excluded channels are shown as 0). However, in the block average output, these channels don't appear to be excluded. I was wondering what was the reason for this.
I was also wondering if it's possible to exclude channels from the calculations manually. Thank you.
I am having the same problem. Did you ever figure out how to remedy this?